Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s HindIII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_HindIII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6129090-SRR6129091-SRR6129092-SRR6129093-SRR6129094-SRR6129095-SRR6129096-SRR6129097/__temp__                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  726,169,857
 Normal Paired: 352,003,799 (48.47%)
 Chimeric Paired: 317,891,529 (43.78%)
 Chimeric Ambiguous: 34,105,301 (4.70%)
 Unmapped: 22,169,228 (3.05%)
 Ligation Motif Present: 462,642,128 (63.71%)
Alignable (Normal+Chimeric Paired): 669,895,328 (92.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-12T03:58:45,222]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 537,275,983 (73.99%)
PCR Duplicates: 132,619,345 (18.26%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,460,344,555
Intra-fragment Reads: 68,983,778 (9.50% / 12.84%)
Below MAPQ Threshold: 50,111,307 (6.90% / 9.33%)
Hi-C Contacts: 418,180,898 (57.59% / 77.83%)
 Ligation Motif Present: 319,222,128  (43.96% / 59.41%)
 3' Bias (Long Range): 93% - 7%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 68,871,501  (9.48% / 12.82%)
Intra-chromosomal: 349,309,397  (48.10% / 65.01%)
Short Range (<20Kb): 114,714,576  (15.80% / 21.35%)
Long Range (>20Kb): 234,594,767  (32.31% / 43.66%)